Basic Information
Locus ID:
SOLCI003702800
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold3368 | 21032 | 23978 | - | SOLCI003702800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.38 | 67,804.66 Da | 39.21 | 87.41 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 210 | 458 | 2.4E-86 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 26 | 117 | 4.7E-9 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 24 | 117 | 4.47E-19 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 5 | 122 | 1.7E-14 | IPR011333 |
| SMART | SM00225 | BTB_4 | 29 | 127 | 0.0049 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 210 | 482 | 84.811615 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 97 | 11.254053 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 575 | 611 | - | - |
| Coils | Coil | Coil | 521 | 541 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G14820.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_015089676.1 | BTB/POZ domain-containing protein NPY2-like [Solanum pennellii] | 0 |
| O80970 | Phototropic-responsive NPH3 family protein NPY2 OS=Arabidopsis thaliana OX=3702 GN=NPY2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2BH78 | NPH3 domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_013164 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology