Basic Information
Locus ID:
SOLCI003665100
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
C-5 cytosine-specific DNA methylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold333 | 40078 | 52862 | + | SOLCI003665100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 121,009.71 Da | 47.67 | 71.69 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 613 | 669 | 2.49413E-30 | - |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 630 | 670 | 9.2E-11 | IPR023780 |
| Pfam | PF01426 | BAH domain | 356 | 465 | 2.4E-9 | IPR001025 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 677 | 1038 | 5.0E-34 | IPR001525 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 609 | 673 | 5.68E-13 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 504 | 1039 | 2.72E-74 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 506 | 1056 | 3.0E-238 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 289 | 453 | 3.1E-46 | IPR043151 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 832 | 1005 | 3.0E-238 | - |
| SMART | SM00439 | BAH_4 | 352 | 468 | 6.1E-21 | IPR001025 |
| SMART | SM00298 | chromo_7 | 613 | 672 | 5.8E-13 | IPR000953 |
| PIRSF | PIRSF037404 | DNMT1 | 663 | 934 | 3.5E-36 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 297 | 445 | 2.4E-7 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 442 | 579 | 1.5E-5 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 953 | 1050 | 3.5E-19 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 104 | 336 | 4000.0 | IPR017198 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 614 | 670 | 13.082401 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 504 | 1046 | 47.326942 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 352 | 468 | 17.768837 | IPR001025 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 637 | 657 | - | IPR023779 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 684 | 696 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 773 | 786 | 2.2E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 505 | 521 | 2.2E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 727 | 741 | 2.2E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 269 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 269 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 227 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 587 | 610 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 169 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 161 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.2 | - | 0 |
| RefSeq | XP_015085626.1 | DNA (cytosine-5)-methyltransferase CMT2 isoform X1 [Solanum pennellii] | 0 |
| Q94F87 | DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana OX=3702 GN=CMT2 PE=2 SV=3 | 0 | |
| TrEMBL | A0A6N2CAV1 | DNA (cytosine-5-)-methyltransferase OS=Solanum chilense OX=4083 GN=EJD97_013041 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology