halophFGD

Basic Information

Locus ID: SOLCI003651800

Species & Taxonomic ID: Solanum chilense & 4083

Genome Assembly: GCA_006013705.1

Description: F-box LRR-repeat protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold3317	119183	120931	-	SOLCI003651800

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.53	64,337.63 Da	40.93	109.19	0.18

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	5	47	6.5E-5	IPR001810
SUPERFAMILY	SSF52047	RNI-like	59	280	5.76E-22	-
SUPERFAMILY	SSF52047	RNI-like	266	512	8.48E-31	-
SUPERFAMILY	SSF81383	F-box domain	6	41	4.45E-5	IPR036047
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	258	329	9.2E-6	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	3	257	9.1E-26	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	335	571	1.4E-33	IPR032675
SMART	SM00367	LRR_CC_2	347	372	27.0	IPR006553
SMART	SM00367	LRR_CC_2	191	216	0.0034	IPR006553
SMART	SM00367	LRR_CC_2	524	549	0.12	IPR006553
SMART	SM00367	LRR_CC_2	295	320	530.0	IPR006553
SMART	SM00367	LRR_CC_2	321	346	290.0	IPR006553
SMART	SM00367	LRR_CC_2	217	242	20.0	IPR006553
SMART	SM00367	LRR_CC_2	424	449	48.0	IPR006553
SMART	SM00367	LRR_CC_2	450	470	180.0	IPR006553
SMART	SM00367	LRR_CC_2	96	121	390.0	IPR006553
SMART	SM00367	LRR_CC_2	498	523	0.42	IPR006553

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K03360 (F-box and leucine-rich repeat protein GRR1)

Pathway:

ko04111 (Cell cycle - yeast) map04111 (Cell cycle - yeast) ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G80630.1	RNI-like superfamily protein.
RefSeq	XP_015069040.1	F-box/LRR-repeat protein 7 [Solanum pennellii]
TrEMBL	A0A6N2BC73	F-box domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_012977 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	19	gene_21430, gene_21431, gene_21432, gene_21433, gene_21436 ... gene_21437, gene_21453, gene_21454, gene_21456, gene_21457, gene_21459, gene_21460, gene_26246, gene_26247, gene_26248, gene_26251, gene_26255, gene_26256, gene_26257
Amaranthaceae	Atriplex hortensis	6	Ah010442, Ah010443, Ah010444, Ah010447, Ah010794, Ah024164
Amaranthaceae	Beta vulgaris	3	BVRB_7g160670, BVRB_9g218820, BVRB_9g218830
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg24776, Sbi_jg8641
Amaranthaceae	Salicornia europaea	1	Seu_jg19963
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00005111
Amaranthaceae	Suaeda glauca	3	Sgl56011, Sgl60655, Sgl61204
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000015098, gene:ENSEOMG00000019679 ... gene:ENSEOMG00000035959, gene:ENSEOMG00000049759, gene:ENSEOMG00000052680, gene:ENSEOMG00000053013
Amaranthaceae	Chenopodium quinoa	16	CQ.Regalona.r1.1AG0013100, CQ.Regalona.r1.1BG0012960 ... CQ.Regalona.r1.7BG0009310, CQ.Regalona.r1.7BG0009320, CQ.Regalona.r1.7BG0009330, CQ.Regalona.r1.7BG0009340, CQ.Regalona.r1.7BG0009360, CQ.Regalona.r1.7BG0009670, CQ.Regalona.r1.7BG0011330, CQ.Regalona.r1.9AG0008630, CQ.Regalona.r1.9AG0009240, CQ.Regalona.r1.9AG0015160, CQ.Regalona.r1.9AG0015230, CQ.Regalona.r1.9AG0015240, CQ.Regalona.r1.9AG0015250, CQ.Regalona.r1.9BG0013090
Apiaceae	Apium graveolens	1	Ag4G00092
Asteraceae	Flaveria trinervia	1	Ftri1G24598
Brassicaceae	Arabidopsis thaliana	1	AT1G80630.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10018340m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp5g35130.v2.2
Brassicaceae	Brassica nigra	1	BniB06g068330.2N
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG01.792
Portulacaceae	Portulaca oleracea	4	evm.TU.LG08.980, evm.TU.LG08.981, evm.TU.LG22.91 ... evm.TU.LG22.92
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.57916.3, evm.TU.57917.3
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-6695
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-16976
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-12271, nbisL1-mrna-12272
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-17128
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-20704
Salicaceae	Populus euphratica	1	populus_peu34905
Solanaceae	Lycium barbarum	4	gene-LOC132631481, gene-LOC132631483, gene-LOC132633051 ... gene-LOC132634305
Solanaceae	Solanum chilense	1	SOLCI003651800
Solanaceae	Solanum pennellii	1	gene-LOC107013683
Tamaricaceae	Reaumuria soongarica	2	STRG.19304_chr07_+, STRG.19306_chr07_-
Tamaricaceae	Tamarix chinensis	2	TC08G2295, TC08G2298