Basic Information
Locus ID:
SOLCI003636300
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold330 | 195080 | 199483 | - | SOLCI003636300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.78 | 69,098.86 Da | 35.87 | 84.90 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00651 | BTB/POZ domain | 26 | 116 | 2.0E-7 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 210 | 463 | 9.6E-87 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 21 | 114 | 8.37E-18 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 8 | 120 | 3.3E-13 | IPR011333 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 97 | 9.909723 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 210 | 487 | 86.187729 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 588 | 614 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 493 | 525 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 588 | 626 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G14820.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_015061388.1 | BTB/POZ domain-containing protein NPY2 [Solanum pennellii] | 0 |
| O80970 | Phototropic-responsive NPH3 family protein NPY2 OS=Arabidopsis thaliana OX=3702 GN=NPY2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2C8B8 | Phototropic-responsive NPH3 family protein OS=Solanum chilense OX=4083 GN=EJD97_012929 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology