Basic Information
Locus ID:
SOLCI003627700
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Short Name:
NTMC2T2.1
Description:
Calcium lipid binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold3295 | 122332 | 133386 | - | SOLCI003627700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 63,158.46 Da | 26.06 | 102.06 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 264 | 366 | 2.76033E-25 | - |
| CDD | cd00030 | C2 | 439 | 535 | 4.14756E-28 | - |
| Pfam | PF00168 | C2 domain | 262 | 366 | 7.3E-23 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 70 | 248 | 8.0E-14 | IPR039010 |
| Pfam | PF00168 | C2 domain | 437 | 539 | 1.2E-24 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 260 | 392 | 8.33E-30 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 433 | 556 | 8.63E-33 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 255 | 390 | 2.7E-32 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 423 | 555 | 4.8E-35 | IPR035892 |
| SMART | SM00239 | C2_3c | 438 | 536 | 4.2E-25 | IPR000008 |
| SMART | SM00239 | C2_3c | 263 | 363 | 5.4E-22 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 67 | 249 | 28.73649 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 419 | 537 | 20.832787 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 243 | 364 | 20.506107 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 480 | 493 | 3.0E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 502 | 510 | 3.0E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 454 | 466 | 3.0E-6 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_004242744.1 | synaptotagmin-5 [Solanum lycopersicum] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2BFG2 | Synaptotagmin-5 OS=Solanum chilense OX=4083 GN=EJD97_012899 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology