Basic Information
Locus ID:
SOLCI003616300
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold3284 | 139 | 8472 | + | SOLCI003616300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.88 | 102,522.15 Da | 44.01 | 83.63 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00628 | PHD-finger | 548 | 590 | 1.7E-7 | IPR019787 |
| Pfam | PF16135 | Tify domain binding domain | 485 | 530 | 1.3E-12 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 206 | 261 | 2.8E-12 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 538 | 593 | 4.11E-15 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 787 | 878 | 1.27E-6 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 627 | 689 | 2.44E-8 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 535 | 612 | 1.3E-17 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 631 | 695 | 2.1E-11 | IPR013083 |
| SMART | SM00249 | PHD_3 | 636 | 693 | 0.023 | IPR001965 |
| SMART | SM00249 | PHD_3 | 547 | 588 | 1.8E-10 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 545 | 590 | 10.388899 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 548 | 587 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 341 | 364 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36720.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_015088705.1 | uncharacterized protein LOC107031751 isoform X1 [Solanum pennellii] | 0 |
| Q6PDQ2 | Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus OX=10090 GN=Chd4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BKT4 | PHD-type domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_012859 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology