Basic Information
Locus ID:
SOLCI003572100
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold3247 | 33110 | 34945 | + | SOLCI003572100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.48 | 34,770.84 Da | 44.11 | 73.66 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 52 | 90 | 8.52122E-10 | - |
| Pfam | PF03145 | Seven in absentia protein family | 96 | 294 | 3.0E-78 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 49 | 94 | 1.41E-5 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 107 | 298 | 6.54E-42 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 25 | 141 | 2.7E-8 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 167 | 295 | 4.5E-32 | IPR008974 |
| Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 142 | 166 | 2.1E-7 | - |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 107 | 167 | 14.228174 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 54 | 90 | 8.978064 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58040.1 | seven in absentia of Arabidopsis 2. Encodes a RING finger domain containing protein that interacts with AtRAP2.2. | 0 |
| RefSeq | XP_015089663.1 | E3 ubiquitin-protein ligase SINAT2-like [Solanum pennellii] | 0 |
| Q9M2P4 | E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana OX=3702 GN=SINAT2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BFU4 | RING-type E3 ubiquitin transferase OS=Solanum chilense OX=4083 GN=EJD97_012697 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology