halophFGD

Basic Information

Locus ID: SOLCI003569900

Species & Taxonomic ID: Solanum chilense & 4083

Genome Assembly: GCA_006013705.1

Description: Ribonuclease H protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold3245	26973	29007	+	SOLCI003569900

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.81	71,657.50 Da	49.30	60.17	-1.05

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF14111	Domain of unknown function (DUF4283)	453	591	2.2E-34	IPR025558
MobiDBLite	mobidb-lite	consensus disorder prediction	275	306	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	221	241	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	307	331	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	162	202	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	584	612	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	266	332	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	214	241	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	26	40	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	26	47	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	176	202	-	-

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_019069073.1	uncharacterized protein LOC109120127 [Solanum lycopersicum]	0
TrEMBL	A0A6N2BIH1	DUF4283 domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_012683 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Asparagaceae	Asparagus officinalis	1	AsparagusV1_04.681.V1.1
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate04g04130
Solanaceae	Lycium barbarum	44	gene-LOC132599789, gene-LOC132601267, gene-LOC132601380 ... gene-LOC132601883, gene-LOC132601893, gene-LOC132601922, gene-LOC132606002, gene-LOC132607734, gene-LOC132609505, gene-LOC132610402, gene-LOC132611827, gene-LOC132612098, gene-LOC132612101, gene-LOC132612132, gene-LOC132612161, gene-LOC132612301, gene-LOC132612811, gene-LOC132612943, gene-LOC132613748, gene-LOC132615817, gene-LOC132617405, gene-LOC132619559, gene-LOC132619608, gene-LOC132620049, gene-LOC132623978, gene-LOC132624193, gene-LOC132624351, gene-LOC132624353, gene-LOC132624363, gene-LOC132628281, gene-LOC132628294, gene-LOC132628470, gene-LOC132629150, gene-LOC132631066, gene-LOC132631437, gene-LOC132631524, gene-LOC132631534, gene-LOC132637239, gene-LOC132637284, gene-LOC132639155, gene-LOC132639331, gene-LOC132639829, gene-LOC132643879, gene-LOC132644615
Solanaceae	Solanum chilense	37	SOLCI000177100, SOLCI000563900, SOLCI001032000 ... SOLCI001267600, SOLCI001302000, SOLCI001561300, SOLCI001623700, SOLCI001652900, SOLCI002142100, SOLCI002298300, SOLCI002435500, SOLCI002634400, SOLCI002750700, SOLCI003008500, SOLCI003121300, SOLCI003335900, SOLCI003420000, SOLCI003569900, SOLCI003899300, SOLCI003914900, SOLCI004089200, SOLCI004107200, SOLCI004164900, SOLCI004492500, SOLCI004715900, SOLCI004719400, SOLCI004929300, SOLCI004976100, SOLCI005111200, SOLCI005325900, SOLCI005500300, SOLCI006148400, SOLCI006625600, SOLCI006891100, SOLCI007303800, SOLCI007398600, SOLCI007411400
Solanaceae	Solanum pennellii	3	gene-LOC107022842, gene-LOC114076821, gene-LOC114077933