Basic Information
Locus ID:
SOLCI003561600
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Short Name:
UBC4
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold3239 | 1306 | 4170 | + | SOLCI003561600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.45 | 21,454.11 Da | 48.04 | 71.32 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 7 | 149 | 1.07849E-48 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 10 | 148 | 5.9E-35 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 4 | 154 | 1.65E-42 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 167 | 3.3E-47 | IPR016135 |
| SMART | SM00212 | ubc_7 | 4 | 154 | 4.5E-46 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 154 | 39.149281 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 79 | 95 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 156 | 190 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G63800.1 | ubiquitin-conjugating enzyme 5. | 0 |
| RefSeq | XP_004229945.1 | ubiquitin-conjugating enzyme E2-23 kDa [Solanum lycopersicum] | 0 |
| P42749 | Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana OX=3702 GN=UBC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6N2BDA2 | UBC core domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_012673 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology