halophFGD

Basic Information

Locus ID: SOLCI003561100

Species & Taxonomic ID: Solanum chilense & 4083

Genome Assembly: GCA_006013705.1

Description: POT family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold3238	68264	69286	-	SOLCI003561100

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.96	39,829.92 Da	38.45	105.79	-0.15

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	8	41	9.4E-4	IPR001810
SUPERFAMILY	SSF81383	F-box domain	7	52	1.83E-7	IPR036047
SUPERFAMILY	SSF52047	RNI-like	94	257	1.26E-7	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	2	225	3.7E-8	IPR032675

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K14638 (solute carrier family 15 (peptide/histidine transporter), member 3/4)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G42720.1	FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein.
RefSeq	XP_015087190.1	putative F-box protein At1g49610 [Solanum pennellii]
TrEMBL	A0A6N2BER4	F-box domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_012672 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg16990, jg16992, jg27968, jg9476
Aizoaceae	Mesembryanthemum crystallinum	6	gene_17890, gene_23843, gene_23845, gene_26069, gene_26076 ... gene_8928
Amaranthaceae	Atriplex hortensis	15	Ah003492, Ah003713, Ah007308, Ah011333, Ah011344, Ah011345 ... Ah011352, Ah017555, Ah022045, Ah028504, Ah033039, Ah033040, Ah033075, Ah035474, Ah038475
Amaranthaceae	Beta vulgaris	5	BVRB_2g026890, BVRB_9g204170, BVRB_9g211600, BVRB_9g211710 ... BVRB_9g211720
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg12067, Sbi_jg12074, Sbi_jg21899, Sbi_jg46991 ... Sbi_jg46997, Sbi_jg46998
Amaranthaceae	Salicornia europaea	4	Seu_jg15849, Seu_jg20904, Seu_jg21273, Seu_jg21278
Amaranthaceae	Suaeda aralocaspica	9	GOSA_00008468, GOSA_00009619, GOSA_00009624, GOSA_00009625 ... GOSA_00009626, GOSA_00009627, GOSA_00024068, GOSA_00024069, GOSA_00028233
Amaranthaceae	Suaeda glauca	24	Sgl21428, Sgl53024, Sgl58299, Sgl63149, Sgl63284, Sgl63728 ... Sgl63738, Sgl63739, Sgl63740, Sgl67763, Sgl68229, Sgl68230, Sgl68232, Sgl80475, Sgl80479, Sgl80481, Sgl80483, Sgl80484, Sgl82932, Sgl82936, Sgl82937, Sgl82939, Sgl82941, Sgl82942
Amaranthaceae	Chenopodium album	15	gene:ENSEOMG00000009238, gene:ENSEOMG00000015328 ... gene:ENSEOMG00000015409, gene:ENSEOMG00000016908, gene:ENSEOMG00000016955, gene:ENSEOMG00000018236, gene:ENSEOMG00000019663, gene:ENSEOMG00000020668, gene:ENSEOMG00000042248, gene:ENSEOMG00000050047, gene:ENSEOMG00000050424, gene:ENSEOMG00000050635, gene:ENSEOMG00000051975, gene:ENSEOMG00000052346, gene:ENSEOMG00000053019
Amaranthaceae	Chenopodium quinoa	15	CQ.Regalona.r1.2AG0010070, CQ.Regalona.r1.2AG0019370 ... CQ.Regalona.r1.2BG0008820, CQ.Regalona.r1.2BG0011640, CQ.Regalona.r1.2BG0011700, CQ.Regalona.r1.2BG0021080, CQ.Regalona.r1.2BG0021090, CQ.Regalona.r1.2BG0021100, CQ.Regalona.r1.2BG0021110, CQ.Regalona.r1.9AG0011500, CQ.Regalona.r1.9BG0010960, CQ.Regalona.r1.9BG0010980, CQ.Regalona.r1.9BG0011000, CQ.Regalona.r1.9BG0021180, CQ.Regalona.r1.9BG0021200
Anacardiaceae	Pistacia vera	7	pistato.v30081860, pistato.v30081870, pistato.v30081880 ... pistato.v30081890, pistato.v30164750, pistato.v30209840, pistato.v30283190
Apiaceae	Apium graveolens	1	Ag1G00384
Asteraceae	Flaveria trinervia	3	Ftri13G25356, Ftri18G18017, Ftri6G11251
Casuarinaceae	Casuarina equisetifolia	1	Ceq02G0902
Casuarinaceae	Casuarina glauca	1	Cgl02G0915
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-788
Nitrariaceae	Nitraria sibirica	16	evm.TU.LG01.1927, evm.TU.LG01.305, evm.TU.LG01.327 ... evm.TU.LG01.356, evm.TU.LG01.683, evm.TU.LG01.726, evm.TU.LG01.727, evm.TU.LG01.728, evm.TU.LG02.2125, evm.TU.LG04.1935, evm.TU.LG04.1937, evm.TU.LG04.2275, evm.TU.LG05.375, evm.TU.LG05.378, evm.TU.LG06.972, evm.TU.LG06.974
Plantaginaceae	Plantago ovata	4	Pov_00014477, Pov_00020690, Pov_00032420, Pov_00036996
Poaceae	Lolium multiflorum	1	gene-QYE76_068143
Portulacaceae	Portulaca oleracea	7	evm.TU.LG04.3334, evm.TU.LG04.3336, evm.TU.LG04.3338 ... evm.TU.LG16.260, evm.TU.LG16.261, evm.TU.LG16.262, evm.TU.LG16.263
Rhizophoraceae	Bruguiera sexangula	9	evm.TU.58473.3, evm.TU.58474.3 ... evm.TU.Scaffold_10_RagTag.1290, evm.TU.Scaffold_10_RagTag.1331, evm.TU.Scaffold_10_RagTag.1332, evm.TU.Scaffold_10_RagTag.1333, evm.TU.Scaffold_10_RagTag.1336, evm.TU.Scaffold_18_RagTag.532, evm.TU.Scaffold_18_RagTag.533
Rhizophoraceae	Carallia pectinifolia	19	nbisL1-mrna-27616, nbisL1-mrna-27618, nbisL1-mrna-27622 ... nbisL1-mrna-27625, nbisL1-mrna-27697, nbisL1-mrna-27702, nbisL1-mrna-27704, nbisL1-mrna-27905, nbisL1-mrna-27907, nbisL1-mrna-27909, nbisL1-mrna-27985, nbisL1-mrna-27987, nbisL1-mrna-27988, nbisL1-mrna-7005, nbisL1-mrna-7058, nbisL1-mrna-7059, nbisL1-mrna-7060, nbisL1-mrna-7061, nbisL1-mrna-7065
Rhizophoraceae	Ceriops tagal	6	nbisL1-mrna-10287, nbisL1-mrna-12046, nbisL1-mrna-18898 ... nbisL1-mrna-18899, nbisL1-mrna-8061, nbisL1-mrna-8062
Rhizophoraceae	Ceriops zippeliana	6	nbisL1-mrna-11052, nbisL1-mrna-7949, nbisL1-mrna-8010 ... nbisL1-mrna-8788, nbisL1-mrna-8789, nbisL1-mrna-8837
Rhizophoraceae	Kandelia candel	6	add.evm.TU.utg000023l.32, evm.TU.utg000004l.83 ... evm.TU.utg000006l.823, evm.TU.utg000023l.139, evm.TU.utg000023l.90, evm.TU.utg000033l.565
Rhizophoraceae	Kandelia obovata	2	Maker00014848, Maker00018808
Rhizophoraceae	Rhizophora apiculata	6	nbisL1-mrna-16397, nbisL1-mrna-16436, nbisL1-mrna-19692 ... nbisL1-mrna-20832, nbisL1-mrna-23431, nbisL1-mrna-7349
Rhizophoraceae	Rhizophora mangle	6	nbisL1-mrna-17932, nbisL1-mrna-17935, nbisL1-mrna-17988 ... nbisL1-mrna-21301, nbisL1-mrna-21303, nbisL1-mrna-21364
Salicaceae	Populus euphratica	8	populus_peu00619, populus_peu16916, populus_peu24661 ... populus_peu24662, populus_peu24664, populus_peu24675, populus_peu24676, populus_peu30273
Solanaceae	Lycium barbarum	21	gene-LOC132601784, gene-LOC132601790, gene-LOC132610625 ... gene-LOC132611099, gene-LOC132611566, gene-LOC132611567, gene-LOC132611651, gene-LOC132611738, gene-LOC132615103, gene-LOC132616224, gene-LOC132618779, gene-LOC132619204, gene-LOC132619293, gene-LOC132619703, gene-LOC132628759, gene-LOC132631532, gene-LOC132633437, gene-LOC132633439, gene-LOC132637401, gene-LOC132638367, gene-LOC132642006
Solanaceae	Solanum chilense	9	SOLCI001031400, SOLCI001031500, SOLCI003560900 ... SOLCI003561100, SOLCI003839000, SOLCI004517500, SOLCI005665000, SOLCI006910300, SOLCI007377100
Solanaceae	Solanum pennellii	13	gene-LOC107003547, gene-LOC107014443, gene-LOC107022870 ... gene-LOC107024245, gene-LOC107029760, gene-LOC107029892, gene-LOC107030419, gene-LOC107030421, gene-LOC107030424, gene-LOC114073980, gene-LOC114073981, gene-LOC114074087, gene-LOC114078590