Basic Information
Locus ID:
SOLCI003557000
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
F-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold3233 | 25725 | 27743 | - | SOLCI003557000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.88 | 45,693.58 Da | 34.62 | 88.35 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 84 | 123 | 1.1E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 83 | 130 | 2.75E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 72 | 122 | 3.3E-7 | - |
| SMART | SM00256 | fbox_2 | 84 | 124 | 8.7E-7 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 78 | 125 | 8.888098 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23880.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_015057410.1 | F-box/kelch-repeat protein At3g23880-like, partial [Solanum pennellii] | 0 |
| Q9LIR8 | F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana OX=3702 GN=At3g23880 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2BL87 | F-box domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_012655 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 7 | gene-LOC132601986, gene-LOC132601987, gene-LOC132603133 ... |
| Solanaceae | Solanum chilense | 6 | SOLCI000005900, SOLCI001662300, SOLCI001819600 ... |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107001609, gene-LOC107010212, gene-LOC107025894 ... |