Basic Information
Locus ID:
SOLCI003510700
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold3190 | 17754 | 22397 | + | SOLCI003510700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.29 | 53,130.94 Da | 37.17 | 70.29 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 291 | 326 | 1.0E-6 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 196 | 267 | 1.3E-8 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 331 | 371 | 0.02 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 420 | 456 | 4.8E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 167 | 457 | 7.32E-63 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 153 | 461 | 1.6E-125 | IPR015943 |
| SMART | SM00320 | WD40_4 | 246 | 283 | 0.35 | IPR001680 |
| SMART | SM00320 | WD40_4 | 329 | 371 | 0.0022 | IPR001680 |
| SMART | SM00320 | WD40_4 | 205 | 243 | 0.036 | IPR001680 |
| SMART | SM00320 | WD40_4 | 374 | 414 | 340.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 417 | 456 | 6.7E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 287 | 326 | 1.5E-8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 211 | 252 | 10.14085 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 424 | 457 | 12.103769 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 424 | 457 | 14.652308 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 294 | 335 | 14.852817 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 294 | 326 | 12.051043 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 443 | 457 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22910.1 | FIZZY-related 2. | 0 |
| RefSeq | XP_004252641.1 | protein FIZZY-RELATED 2-like [Solanum lycopersicum] | 0 |
| Q9M7I2 | B-type cell cycle switch protein ccs52A OS=Medicago truncatula OX=3880 GN=CCS52A PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BDN2 | ANAPC4_WD40 domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_012503 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology