Basic Information
Locus ID:
SOLCI003506800
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
DNA-binding domain in plant proteins such as APETALA2 and EREBPs
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold3186 | 14984 | 15853 | + | SOLCI003506800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.40 | 32,791.39 Da | 51.79 | 64.46 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00018 | AP2 | 40 | 97 | 3.51683E-28 | IPR001471 |
| Pfam | PF00847 | AP2 domain | 40 | 90 | 1.1E-11 | IPR001471 |
| SUPERFAMILY | SSF54171 | DNA-binding domain | 40 | 98 | 3.07E-19 | IPR016177 |
| Gene3D | G3DSA:3.30.730.10 | AP2/ERF domain | 39 | 99 | 7.5E-22 | IPR036955 |
| SMART | SM00380 | rav1_2 | 40 | 104 | 2.5E-33 | IPR001471 |
| ProSiteProfiles | PS51032 | AP2/ERF domain profile. | 40 | 98 | 19.282373 | IPR001471 |
| PRINTS | PR00367 | Ethylene responsive element binding protein signature | 64 | 80 | 2.9E-7 | IPR001471 |
| PRINTS | PR00367 | Ethylene responsive element binding protein signature | 41 | 52 | 2.9E-7 | IPR001471 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19790.1 | related to AP2 11. encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family (RAP2.11). The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. | 0 |
| RefSeq | XP_015055567.1 | ethylene-responsive transcription factor ERN1-like [Solanum pennellii] | 0 |
| A2Q5W1 | Ethylene-responsive transcription factor ERN1 OS=Medicago truncatula OX=3880 GN=ERN1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2BD29 | AP2/ERF domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_012479 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg15993, jg16832, jg36156, jg38147 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_12077, gene_4466 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021306 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g070980 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg59159, Sbi_jg62705, Sbi_jg63478 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg1305, Seu_jg23424 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00012772, GOSA_00014326 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02562, Sgl07717 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000009185, gene:ENSEOMG00000012145 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.3AG0018800, CQ.Regalona.r1.3BG0019410 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30085870 |
| Apiaceae | Apium graveolens | 4 | Ag10G02985, Ag3G02846, Ag4G01996, Ag9G01377 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G014210 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103717663, gene-LOC103723824, gene-LOC120105139 |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G12328, Ftri2G16437 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G19790.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015715m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g24610.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g042940.2N, BniB05g043630.2N, BniB08g010030.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq05G2363, Ceq08G1402 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl05G2529, CglSG0006 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g11830 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g37390 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.375 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020748 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G28454 |
| Poaceae | Echinochloa crus-galli | 7 | AH03.3468, AH03.551, BH03.3679, BH03.575, BH03.654, CH03.746 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_7AG0560100, gene-QOZ80_7AG0574100 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0132160.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_040586, gene-QYE76_042112 |
| Poaceae | Oryza coarctata | 3 | Oco13G010750, Oco14G003880, Oco14G011450 |
| Poaceae | Oryza sativa | 2 | LOC_Os07g10410.1, LOC_Os07g38750.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G072800, gene-BS78_02G325300 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G003740, Chr19G016380, Chr24G010960, Chr27G013540 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G373000, Tel6E01G704700 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG023680, gene_TRIDC2BG029450 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G185600.1.cds1, TraesCS2B02G221700.1.cds1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb107500_P001, Zm00001eb302890_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-10526, nbis-gene-35547, nbis-gene-615 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g4892, Zma_g5412, Zma_g6704 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG07.2099, evm.TU.LG15.1032, evm.TU.LG18.1101 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g04740 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_1_RagTag.427, evm.TU.Scaffold_2_RagTag.1826 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-2957, nbisL1-mrna-3206, nbisL1-mrna-7753 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-16069, nbisL1-mrna-2755, nbisL1-mrna-6349 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-13879, nbisL1-mrna-22612, nbisL1-mrna-5459 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000002l.4, add.evm.TU.utg000009l.74 ... |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011553 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-20134, nbisL1-mrna-21927, nbisL1-mrna-5824 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-12434, nbisL1-mrna-16354, nbisL1-mrna-575 |
| Salicaceae | Populus euphratica | 4 | populus_peu04466, populus_peu16062, populus_peu19374 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132605516, gene-LOC132608335, gene-LOC132629187 |
| Solanaceae | Solanum chilense | 3 | SOLCI003506800, SOLCI003927100, SOLCI004559600 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107001618, gene-LOC107002167, gene-LOC107016376 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G2691 |
| Zosteraceae | Zostera marina | 1 | Zosma05g22960.v3.1 |