Basic Information
Locus ID:
SOLCI003500500
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold318 | 103676 | 109250 | + | SOLCI003500500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 63,493.08 Da | 27.95 | 106.60 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 442 | 538 | 5.28473E-27 | - |
| CDD | cd00030 | C2 | 268 | 370 | 2.13376E-27 | - |
| Pfam | PF00168 | C2 domain | 266 | 370 | 8.6E-23 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 76 | 252 | 3.2E-15 | IPR039010 |
| Pfam | PF00168 | C2 domain | 440 | 535 | 5.0E-24 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 264 | 396 | 6.55E-30 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 438 | 558 | 7.97E-32 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 427 | 558 | 1.1E-32 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 259 | 394 | 1.1E-32 | IPR035892 |
| SMART | SM00239 | C2_3c | 441 | 539 | 2.4E-22 | IPR000008 |
| SMART | SM00239 | C2_3c | 267 | 367 | 1.7E-22 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 419 | 540 | 21.116854 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 71 | 253 | 29.084433 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 247 | 368 | 20.300158 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 457 | 469 | 2.3E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 483 | 496 | 2.3E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 505 | 513 | 2.3E-6 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_010324780.1 | synaptotagmin-5-like isoform X1 [Solanum lycopersicum] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2CEJ6 | Synaptotagmin-5-like OS=Solanum chilense OX=4083 GN=EJD97_012462 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology