Basic Information
Locus ID:
SOLCI003483400
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold3161 | 15802 | 18627 | + | SOLCI003483400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.55 | 37,703.98 Da | 65.30 | 97.99 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 105 | 148 | 1.98504E-17 | - |
| Pfam | PF13639 | Ring finger domain | 105 | 148 | 1.5E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 102 | 152 | 5.81E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 80 | 156 | 3.5E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 106 | 147 | 3.2E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 106 | 148 | 12.282736 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G20030.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015075881.2 | putative RING-H2 finger protein ATL12 [Solanum pennellii] | 0 |
| Q9SL78 | Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana OX=3702 GN=ATL12 PE=3 SV=1 | 0 | |
| TrEMBL | A0A6N2BIR7 | RING-type domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_012390 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology