Basic Information
Locus ID:
SOLCI003459600
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Rho GTPase-activating protein 7-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold3138 | 7422 | 42839 | + | SOLCI003459600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 85,221.70 Da | 51.20 | 76.65 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00821 | PH | 1 | 91 | 2.09209E-9 | - |
| CDD | cd00159 | RhoGAP | 160 | 221 | 5.47686E-11 | - |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 513 | 593 | 4.0E-21 | IPR025757 |
| Pfam | PF00169 | PH domain | 6 | 95 | 1.3E-10 | IPR001849 |
| Pfam | PF00620 | RhoGAP domain | 160 | 228 | 1.5E-12 | IPR000198 |
| SUPERFAMILY | SSF50729 | PH domain-like | 4 | 100 | 1.42E-14 | - |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 160 | 278 | 2.16E-15 | IPR008936 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 154 | 285 | 3.3E-18 | IPR008936 |
| Gene3D | G3DSA:2.30.29.30 | - | 1 | 105 | 2.4E-12 | IPR011993 |
| SMART | SM00324 | RhoGAP_3 | 85 | 272 | 0.0046 | IPR000198 |
| SMART | SM00233 | PH_update | 1 | 98 | 3.8E-7 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 1 | 96 | 13.188 | IPR001849 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 79 | 275 | 14.02737 | IPR000198 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 315 | 338 | - | - |
| Coils | Coil | Coil | 503 | 537 | - | - |
| Coils | Coil | Coil | 723 | 743 | - | - |
| Coils | Coil | Coil | 562 | 596 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19390.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_015058914.1 | rho GTPase-activating protein 7-like isoform X6 [Solanum pennellii] | 0 |
| Q8RWQ4 | Rho GTPase-activating protein 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2BDK4 | Rho GTPase-activating protein 7-like (Fragment) OS=Solanum chilense OX=4083 GN=EJD97_012297 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology