Basic Information
Locus ID:
SOLCI003424700
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Holliday junction DNA helicase ruvB N-terminus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold3103 | 25783 | 31266 | - | SOLCI003424700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 92,490.14 Da | 41.39 | 88.07 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 557 | 690 | 3.04808E-24 | - |
| Pfam | PF17862 | AAA+ lid domain | 714 | 755 | 8.9E-12 | IPR041569 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 559 | 689 | 2.6E-38 | IPR003959 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 95 | 345 | 1.7E-5 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 519 | 776 | 3.18E-61 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 691 | 796 | 1.2E-95 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 518 | 801 | 1.2E-95 | IPR027417 |
| SMART | SM00382 | AAA_5 | 555 | 692 | 6.1E-21 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 662 | 681 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 465 | 485 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64110.2 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_015085505.1 | uncharacterized protein LOC107028812 [Solanum pennellii] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | A0A6N2BK60 | AAA domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_012169 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology