Basic Information
Locus ID:
SOLCI003418100
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Glutamate-gated receptor that probably acts as non- selective cation channel
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold31 | 119145 | 120295 | + | SOLCI003418100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.30 | 38,502.98 Da | 39.25 | 96.54 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08544 | GHMP kinases C terminal | 262 | 336 | 6.9E-10 | IPR013750 |
| Pfam | PF00288 | GHMP kinases N terminal domain | 134 | 196 | 2.9E-9 | IPR006204 |
| SUPERFAMILY | SSF55060 | GHMP Kinase, C-terminal domain | 218 | 337 | 5.55E-28 | IPR036554 |
| SUPERFAMILY | SSF54211 | Ribosomal protein S5 domain 2-like | 66 | 204 | 1.21E-22 | IPR020568 |
| Gene3D | G3DSA:3.30.230.10 | - | 61 | 134 | 1.4E-14 | IPR014721 |
| Gene3D | G3DSA:3.30.230.10 | - | 135 | 216 | 2.1E-20 | IPR014721 |
| Gene3D | G3DSA:3.30.70.890 | - | 217 | 348 | 6.6E-37 | IPR036554 |
| PIRSF | PIRSF000676 | Homoser_kin | 62 | 359 | 1.1E-81 | IPR000870 |
| PRINTS | PR00958 | Homoserine kinase signature | 144 | 159 | 8.1E-29 | - |
| PRINTS | PR00958 | Homoserine kinase signature | 303 | 318 | 8.1E-29 | - |
| PRINTS | PR00958 | Homoserine kinase signature | 223 | 240 | 8.1E-29 | - |
| PRINTS | PR00958 | Homoserine kinase signature | 73 | 88 | 8.1E-29 | - |
| PRINTS | PR00958 | Homoserine kinase signature | 183 | 196 | 8.1E-29 | - |
| Hamap | MF_00384 | Homoserine kinase [thrB]. | 66 | 359 | 25.550362 | IPR000870 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G17265.1 | homoserine kinase. Encodes a homoserine kinase (HSK) which produces O-phospho-L-homoserine (HserP), a compound at the branching point of methionine and threonine biosynthesis. HSK is found in the stromal fraction of chloroplasts. Mutants are susceptible to downy mildew fungus Hyaloperonospora parasitica. | 0 |
| RefSeq | XP_015062516.1 | homoserine kinase-like [Solanum pennellii] | 0 |
| Q8L7R2 | Homoserine kinase OS=Arabidopsis thaliana OX=3702 GN=HSK PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2CDB9 | Homoserine kinase OS=Solanum chilense OX=4083 GN=EJD97_012144 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22666 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_21798, gene_24182 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah009839 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g215700 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11226, Sbi_jg46199 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20527 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005430 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl56327, Sgl61837 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015822, gene:ENSEOMG00000038063 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0004380, CQ.Regalona.r1.9AG0020270 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30108670 |
| Apiaceae | Apium graveolens | 1 | Ag11G04488 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G005760 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723480 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.1028.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G31167 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G17265.1, AT4G35295.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022738m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g30610.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g013520.2N, BniB02g013530.2N, BniB03g065000.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1801 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl07G1958, Cgl07G1960 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno02g10430, gene.Cymno02g10480, gene.Cymno02g10520 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0015s00038.v1.0, Dusal.0015s00039.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g18750, gene.Thate01g20730 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.435 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00038219 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G38294, Lb4G21700 |
| Poaceae | Echinochloa crus-galli | 2 | AH07.4051, BH07.3867 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0151680, gene-QOZ80_2BG0207050 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0197860.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_011751, gene-QYE76_039188 |
| Poaceae | Oryza coarctata | 2 | Oco03G026290, Oco04G026720 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g58510.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G342500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0305009 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr23G016220 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G795600, Tel6E01G785800 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC2AG066720, gene_TRIDC2BG071850 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G471500.1.cds1, TraesCS2B02G494300.1.cds1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-39730 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g17488 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.908, evm.TU.LG22.1017 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g11130 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.43002.2, evm.TU.Scaffold_1_RagTag.2395 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13, nbisL1-mrna-59 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19194 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-3187, nbisL1-mrna-9289 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000009l.492 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005078 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-18556, nbisL1-mrna-22443 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-22519, nbisL1-mrna-24146 |
| Salicaceae | Populus euphratica | 2 | populus_peu08417, populus_peu36937 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132614124 |
| Solanaceae | Solanum chilense | 2 | SOLCI002360200, SOLCI003418100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107008113, gene-LOC107018408 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_11353 |
| Tamaricaceae | Tamarix chinensis | 2 | TC10G0275, TC12G0851 |
| Zosteraceae | Zostera marina | 1 | Zosma05g04900.v3.1 |