halophFGD

Basic Information

Locus ID: SOLCI003360700

Species & Taxonomic ID: Solanum chilense & 4083

Genome Assembly: GCA_006013705.1

Description: emb 212,emb212,lec1,nf-yb9

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold3045	15530	18399	+	SOLCI003360700

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.93	29,192.69 Da	46.73	77.88	-0.40

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00808	Histone-like transcription factor (CBF/NF-Y) and archaeal histone	160	199	1.2E-6	IPR003958
SUPERFAMILY	SSF47113	Histone-fold	124	199	1.65E-7	IPR009072
Gene3D	G3DSA:1.10.20.10	Histone, subunit A	150	220	6.3E-8	IPR009072

Gene Ontology

Molecular Function:

GO:0046982 (protein heterodimerization activity)

KEGG Pathway

KO Term:

K08065 (nuclear transcription Y subunit beta)

Pathway:

ko04612 (Antigen processing and presentation) map04612 (Antigen processing and presentation)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G47670.1	nuclear factor Y, subunit B6. Encodes LEC1-Like (L1L), closely related to LEC1 (Leafy Cotyledon1). Functions as a regulator of embryo development.
RefSeq	XP_015075904.1	nuclear transcription factor Y subunit B-6-like [Solanum pennellii]
Swiss-Prot	Q84W66	Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana OX=3702 GN=NFYB6 PE=1 SV=2
TrEMBL	A0A6N2BHP1	CBFD_NFYB_HMF domain-containing protein (Fragment) OS=Solanum chilense OX=4083 GN=EJD97_011912 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Solanaceae	Solanum chilense	1	SOLCI003360700
Solanaceae	Solanum pennellii	6	gene-LOC107019990, gene-LOC107020059, gene-LOC107020084 ... gene-LOC107020086, gene-LOC107020094, gene-LOC107020123
Zosteraceae	Zostera marina	1	Zosma05g03370.v3.1