Basic Information
Locus ID:
SOLCI003353900
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Leucine Rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold3038 | 41586 | 44961 | + | SOLCI003353900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 119,506.41 Da | 36.05 | 96.57 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 807 | 1073 | 2.08109E-90 | - |
| Pfam | PF00560 | Leucine Rich Repeat | 197 | 219 | 0.14 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 802 | 1005 | 1.3E-45 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 411 | 471 | 1.7E-7 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 265 | 280 | 1.7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 31 | 75 | 3.4E-8 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 556 | 673 | 1.98E-21 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 783 | 1074 | 5.13E-75 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 83 | 479 | 2.61E-64 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 32 | 143 | 1.1E-24 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 238 | 332 | 3.0E-28 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 144 | 237 | 1.6E-16 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 410 | 493 | 1.4E-21 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 333 | 409 | 9.8E-16 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 553 | 707 | 2.7E-34 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 880 | 1089 | 1.0E-53 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 768 | 879 | 4.6E-32 | - |
| SMART | SM00369 | LRR_typ_2 | 100 | 124 | 66.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 434 | 458 | 28.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 362 | 386 | 44.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 146 | 173 | 290.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 801 | 1075 | 6.7E-37 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 289 | 313 | 23.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 629 | 652 | 140.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 801 | 1076 | 38.081955 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 126 | 147 | 7.342321 | IPR001611 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 922 | 934 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 807 | 830 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 410 | 423 | 4.2E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 198 | 211 | 4.2E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G74360.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_004235969.1 | probable LRR receptor-like serine/threonine-protein kinase At1g74360 [Solanum lycopersicum] | 0 |
| C0LGJ1 | Probable LRR receptor-like serine/threonine-protein kinase At1g74360 OS=Arabidopsis thaliana OX=3702 GN=At1g74360 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BMV6 | Protein kinase domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_011892 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg18567, jg25728 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19658 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000783 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g114100 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg31053, Sbi_jg58227 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25835 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004690 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54761, Sgl60064 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000004159, gene:ENSEOMG00000022053 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0020040, CQ.Regalona.r1.5BG0021420 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30144530 |
| Apiaceae | Apium graveolens | 3 | Ag4G00384, Ag5G00586, Ag9G00706 |
| Arecaceae | Cocos nucifera | 1 | scaffold079432G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103699166, gene-LOC103710125 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.1386.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri10G18978, Ftri1G04382, Ftri1G33381 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G74360.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10018042m.g.v1.0, Thhalv10019818m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g29520.v2.2, Sp6g07570.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g052850.2N, BniB04g047730.2N, BniB06g047850.2N |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq01G1841, Ceq01G1842, Ceq01G1843 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl01G2008, Cgl01G2009, Cgl01G2010 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g21290 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG10.605, evm.TU.LG10.611 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00011927, Pov_00020588 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb0G37559 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3599, BH03.3816, CH03.4040 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_7AG0575510, gene-QOZ80_7AG0575560 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0128600.1, HORVU.MOREX.r3.7HG0729810.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_039935 |
| Poaceae | Oryza coarctata | 5 | Oco13G011760, Oco14G012530, Oco15G006200, Oco16G005980 ... |
| Poaceae | Oryza sativa | 4 | LOC_Os07g40630.1, LOC_Os08g23290.1, LOC_Os10g03420.1 ... |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_02G338700, gene-BS78_07G190600, gene-BS78_K153400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0206032, Pt_Chr0304721 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr19G002850, Chr27G014300 |
| Poaceae | Thinopyrum elongatum | 4 | Tel2E01G126800, Tel2E01G126900, Tel2E01G352500 ... |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG005720, gene_TRIDC2AG023240 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS2A02G182400.1, TraesCS2B02G208900.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb134820_P001, Zm00001eb326660_P002 |
| Poaceae | Zoysia japonica | 9 | nbis-gene-32862, nbis-gene-38542, nbis-gene-53408 ... |
| Poaceae | Zoysia macrostachya | 5 | Zma_g23775, Zma_g23776, Zma_g23777, Zma_g23782, Zma_g5497 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2676, evm.TU.LG14.1811 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g17540 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.848, evm.TU.Scaffold_4_RagTag.607 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-14525, nbisL1-mrna-14526, nbisL1-mrna-28754 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-20291, nbisL1-mrna-7899 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-12441, nbisL1-mrna-1746 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.387, evm.TU.utg000010l.6 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000150, Maker00008931 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14516, nbisL1-mrna-855 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1580, nbisL1-mrna-8505 |
| Salicaceae | Populus euphratica | 2 | populus_peu28498, populus_peu29924 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132600496, gene-LOC132632903 |
| Solanaceae | Solanum chilense | 2 | SOLCI003353900, SOLCI005511200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107012911, gene-LOC107022828 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G1612 |