Basic Information
Locus ID:
SOLCI003314100
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Broad-Complex, Tramtrack and Bric a brac
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold300 | 54807 | 61781 | + | SOLCI003314100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.49 | 114,278.57 Da | 44.52 | 102.75 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 816 | 894 | 1.13487E-10 | - |
| Pfam | PF00651 | BTB/POZ domain | 675 | 788 | 1.9E-4 | IPR000210 |
| Pfam | PF00651 | BTB/POZ domain | 842 | 942 | 4.9E-7 | IPR000210 |
| SUPERFAMILY | SSF48371 | ARM repeat | 84 | 564 | 7.3E-12 | IPR016024 |
| SUPERFAMILY | SSF54695 | POZ domain | 842 | 942 | 1.1E-9 | IPR011333 |
| SUPERFAMILY | SSF54695 | POZ domain | 664 | 790 | 6.2E-8 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 666 | 792 | 5.6E-16 | IPR011333 |
| Gene3D | G3DSA:1.25.10.10 | - | 45 | 479 | 1.7E-7 | IPR011989 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 812 | 985 | 4.6E-16 | IPR011333 |
| SMART | SM00225 | BTB_4 | 684 | 797 | 3.5 | IPR000210 |
| SMART | SM00225 | BTB_4 | 817 | 945 | 2.3E-5 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 684 | 767 | 9.061762 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 817 | 898 | 11.688375 | IPR000210 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04390.1 | BTB/POZ domain-containing protein. | 0 |
| RefSeq | XP_010327224.1 | BTB/POZ domain-containing protein At1g04390 isoform X1 [Solanum lycopersicum] | 0 |
| P93820 | BTB/POZ domain-containing protein At1g04390 OS=Arabidopsis thaliana OX=3702 GN=At1g04390 PE=2 SV=3 | 0 | |
| TrEMBL | A0A6N2CER8 | BTB domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_011751 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg20575, jg20576 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_12858, gene_7833 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah033734 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg44282 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17744 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00021418, GOSA_00021419 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl63875, Sgl68366, Sgl68367 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000022934, gene:ENSEOMG00000050595 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.2AG0009570 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30164270 |
| Apiaceae | Apium graveolens | 2 | Ag4G01943, Ag4G01944 |
| Arecaceae | Cocos nucifera | 1 | COCNU_12G000690 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719138 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.40.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G01524 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G04390.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006788m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g03210.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g046480.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1586 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1750 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g03320 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1008 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00038060 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G14407, Lb5G26732 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.2679, BH06.2466, CH06.2768 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6BG0501680 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0735850.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_036128, gene-QYE76_036133, gene-QYE76_036134 |
| Poaceae | Oryza coarctata | 1 | Oco12G015320 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g46240.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G228700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0104054, Pt_Chr0401259 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr10G020170, Chr11G002440, Chr11G002460 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G786000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG064970, gene_TRIDC7BG058420 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G465100.1, TraesCS7B02G365800.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb273960_P005, Zm00001eb395680_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-40550 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.691, evm.TU.LG20.1532, evm.TU.LG20.1533 |
| Posidoniaceae | Posidonia oceanica | 4 | gene.Posoc08g06950, gene.Posoc08g07000, gene.Posoc08g07050 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.98 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10499 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5357 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10675 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.58 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013641 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9283 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6913 |
| Salicaceae | Populus euphratica | 1 | populus_peu00147 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627501 |
| Solanaceae | Solanum chilense | 1 | SOLCI003314100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002779 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4647 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G2321 |
| Zosteraceae | Zostera marina | 1 | Zosma03g35200.v3.1 |