Basic Information
Locus ID:
SOLCI003293800
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold299 | 60142 | 80846 | + | SOLCI003293800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 130,673.26 Da | 42.53 | 78.71 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 52 | 175 | 6.18289E-41 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 193 | 521 | 7.20367E-167 | - |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 882 | 1092 | 5.0E-58 | IPR029346 |
| Pfam | PF00917 | MATH domain | 57 | 177 | 4.6E-19 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 195 | 516 | 1.2E-45 | IPR001394 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 620 | 872 | 1.6E-75 | IPR024729 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 48 | 184 | 6.21E-43 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 190 | 547 | 2.16E-96 | IPR038765 |
| Gene3D | G3DSA:3.10.20.90 | - | 680 | 797 | 9.0E-42 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 48 | 191 | 1.1E-53 | IPR008974 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 192 | 520 | 9.2E-89 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 798 | 895 | 3.4E-27 | - |
| SMART | SM00061 | math_3 | 52 | 156 | 2.8E-21 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 50 | 175 | 38.826553 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 195 | 519 | 40.260628 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 196 | 211 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 435 | 452 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 50 | - | - |
| Coils | Coil | Coil | 532 | 562 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.2 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_015058469.1 | ubiquitin carboxyl-terminal hydrolase 13-like isoform X2 [Solanum pennellii] | 0 |
| Q84WU2 | Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2CCZ0 | ubiquitinyl hydrolase 1 OS=Solanum chilense OX=4083 GN=EJD97_011694 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology