Basic Information
Locus ID:
SOLCI003190000
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
DNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold2899 | 46602 | 52081 | + | SOLCI003190000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 79,448.13 Da | 53.70 | 82.98 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 298 | 495 | 1.33493E-92 | - |
| CDD | cd18794 | SF2_C_RecQ | 496 | 629 | 7.90049E-61 | - |
| Pfam | PF16124 | RecQ zinc-binding | 632 | 701 | 2.1E-13 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 306 | 474 | 2.0E-18 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 513 | 619 | 1.1E-16 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 344 | 640 | 5.46E-54 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 268 | 495 | 1.8E-82 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 496 | 704 | 1.3E-61 | IPR027417 |
| SMART | SM00487 | ultradead3 | 300 | 504 | 5.5E-28 | IPR014001 |
| SMART | SM00490 | helicmild6 | 538 | 620 | 4.6E-25 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 298 | 703 | 3.6E-152 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 510 | 660 | 19.616253 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 312 | 488 | 20.034494 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 78 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_015067227.1 | ATP-dependent DNA helicase Q-like 1 [Solanum pennellii] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2BF34 | ATP-dependent DNA helicase OS=Solanum chilense OX=4083 GN=EJD97_011374 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology