Basic Information
Locus ID:
SOLCI003176000
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Regulator of chromosome condensation (RCC1) repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold2883 | 83400 | 85736 | + | SOLCI003176000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 85,032.26 Da | 38.97 | 86.16 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 477 | 758 | 2.91716E-87 | - |
| Pfam | PF13540 | Regulator of chromosome condensation (RCC1) repeat | 229 | 255 | 8.1E-5 | - |
| Pfam | PF00069 | Protein kinase domain | 472 | 754 | 4.1E-49 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 450 | 756 | 1.13E-76 | IPR011009 |
| SUPERFAMILY | SSF50985 | RCC1/BLIP-II | 68 | 295 | 5.1E-15 | IPR009091 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 445 | 558 | 2.6E-31 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 559 | 772 | 5.9E-54 | - |
| Gene3D | G3DSA:2.130.10.30 | - | 156 | 318 | 3.9E-16 | IPR009091 |
| SMART | SM00220 | serkin_6 | 471 | 760 | 5.7E-36 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 471 | 760 | 39.467087 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 604 | 616 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 477 | 499 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 411 | 437 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 417 | 435 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47850.1 | CRINKLY4 related 4. | 0 |
| RefSeq | XP_004250410.1 | serine/threonine-protein kinase-like protein CCR4 [Solanum lycopersicum] | 0 |
| Q9FIJ6 | Serine/threonine-protein kinase-like protein CCR4 OS=Arabidopsis thaliana OX=3702 GN=CCR4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BHB8 | Protein kinase domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_011314 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology