Basic Information
Locus ID:
SOLCI003173700
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
PAS fold
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold2881 | 14753 | 23553 | + | SOLCI003173700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.52 | 105,029.43 Da | 37.68 | 70.78 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00130 | PAS | 216 | 305 | 1.79894E-8 | IPR000014 |
| CDD | cd05574 | STKc_phototropin_like | 683 | 937 | 1.73377E-154 | - |
| CDD | cd00130 | PAS | 499 | 599 | 2.36855E-12 | IPR000014 |
| Pfam | PF13426 | PAS domain | 210 | 306 | 2.3E-19 | IPR000014 |
| Pfam | PF00069 | Protein kinase domain | 687 | 927 | 1.0E-55 | IPR000719 |
| Pfam | PF13426 | PAS domain | 507 | 599 | 1.3E-20 | IPR000014 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 663 | 933 | 1.08E-68 | IPR011009 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | 500 | 599 | 8.52E-25 | IPR035965 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | 210 | 302 | 3.35E-23 | IPR035965 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 684 | 768 | 8.7E-81 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 769 | 935 | 8.7E-81 | - |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | 203 | 369 | 3.3E-47 | - |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | 472 | 637 | 3.0E-55 | - |
| SMART | SM00220 | serkin_6 | 685 | 931 | 7.1E-65 | IPR000719 |
| SMART | SM00091 | pas_2 | 486 | 555 | 0.25 | IPR000014 |
| SMART | SM00086 | pac_2 | 266 | 308 | 1.3E-5 | IPR001610 |
| SMART | SM00086 | pac_2 | 561 | 603 | 2.3E-8 | IPR001610 |
| SMART | SM00091 | pas_2 | 191 | 261 | 0.16 | IPR000014 |
| TIGRFAM | TIGR00229 | sensory_box: PAS domain S-box protein | 509 | 599 | 1.2E-10 | IPR000014 |
| TIGRFAM | TIGR00229 | sensory_box: PAS domain S-box protein | 215 | 309 | 1.6E-10 | IPR000014 |
| ProSiteProfiles | PS50112 | PAS repeat profile. | 488 | 557 | 11.326661 | IPR000014 |
| ProSiteProfiles | PS50113 | PAC domain profile. | 263 | 317 | 11.809996 | IPR000700 |
| ProSiteProfiles | PS50112 | PAS repeat profile. | 189 | 260 | 13.225912 | IPR000014 |
| ProSiteProfiles | PS50113 | PAC domain profile. | 558 | 612 | 11.836575 | IPR000700 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 685 | 937 | 39.961777 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 691 | 714 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 806 | 818 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 78 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 455 | 478 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 184 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 78 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G45780.1 | phototropin 1. Blue-light photoreceptor. Contains a light activated serine-threonine kinase domain and LOV1 and LOV2 repeats. Mutants are defective in blue-light response. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT1 undergoes blue-light-dependent autophosphorylation. At least eight phosphorylation sites have been identified in PHOT1. Phosphorylation of serine851 in the activation loop of PHOT1 appears to be required for stomatal opening, chloroplast accumulation, leaf flattening, and phototropism, and phosphorylation of serine849 may also contribute to the regulation of these responses. Phosphorylation-dependent binding of 14-3-3 proteins to the Hinge1 region of PHOT1 appears to require serine350 and serine376. | 0 |
| RefSeq | NP_001234214.2 | phototropin-1 [Solanum lycopersicum] | 0 |
| O48963 | Phototropin-1 OS=Arabidopsis thaliana OX=3702 GN=PHOT1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BIB9 | LOV domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_011305 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg26617, jg37943 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_26579, gene_5952 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah009900, Ah028129 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_7g174900, BVRB_9g216030 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg11175, Sbi_jg1878, Sbi_jg34642, Sbi_jg46151 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg20490, Seu_jg2880 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00003095, GOSA_00005464 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl55721, Sgl60935, Sgl73166, Sgl76710 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000005298, gene:ENSEOMG00000012984 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.7AG0001910, CQ.Regalona.r1.7BG0004840 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30059470, pistato.v30107130 |
| Apiaceae | Apium graveolens | 4 | Ag10G00514, Ag11G04260, Ag1G00172, Ag5G00026 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G001240 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103702839, gene-LOC103711883, gene-LOC120104603 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.1579.V1.1, AsparagusV1_08.3443.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G34116, Ftri12G17732, Ftri18G22640 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G45780.1, AT5G58140.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10002386m.g.v1.0, Thhalv10012609m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp5g15740.v2.2, Sp6g19820.v2.2, SpUn0096_0010.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g037570.2N, BniB06g024850.2N, BniB08g013390.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq08G2377, Ceq09G0011 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl08G2568, Cgl09G0012 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno02g05450, gene.Cymno05g16010, gene.Cymno06g08120 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0229s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g33280, gene.Thate07g07900 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-11050, nbisL1-mrna-585 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG08.475, evm.TU.LG09.993 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00025324, Pov_00037016 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb1G00638, Lb3G18144, Lb3G19266, Lb4G21672 |
| Poaceae | Echinochloa crus-galli | 6 | AH05.89, AH09.474, BH04.19, BH09.519, CH04.17, CH09.569 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_4AG0323350, gene-QOZ80_4BG0352460 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0159250.1, HORVU.MOREX.r3.5HG0467030.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_003830, gene-QYE76_043366 |
| Poaceae | Oryza coarctata | 3 | Oco07G002660, Oco08G002960, Ocoptg000061lG000070 |
| Poaceae | Oryza sativa | 3 | LOC_Os04g23890.2, LOC_Os11g01140.1, LOC_Os12g01140.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_05G001200, gene-BS78_07G084800 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0303144, Pt_Chr0303196, Pt_Chr0404815, Pt_Chr0705170 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr07G022560, Chr21G008710, Chr23G016080, Chr26G003850 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G491700, Tel5E01G270700 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG039210, gene_TRIDC2BG042220 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G272400.1, TraesCS2B02G290500.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb042710_P003, Zm00001eb163120_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-25863, nbis-gene-8070 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g21060, Zma_g24578 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG02.1540, evm.TU.LG09.342, evm.TU.LG19.1382 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc01g35500, gene.Posoc02g23820, gene.Posoc03g11970 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_13_RagTag.779, evm.TU.Scaffold_1_RagTag.1044 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-30259, nbisL1-mrna-6560 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13434, nbisL1-mrna-19704 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16150, nbisL1-mrna-21161 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000015l.455, evm.TU.utg000016l.887 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015254 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11071, nbisL1-mrna-4374 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-15027, nbisL1-mrna-21778 |
| Salicaceae | Populus euphratica | 4 | populus_peu01127, populus_peu08384, populus_peu08385 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132600827, gene-LOC132645257 |
| Solanaceae | Solanum chilense | 2 | SOLCI002567500, SOLCI003173700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107003486, gene-LOC107004580 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.4869_chr03_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC10G0298, TC11G0028 |
| Zosteraceae | Zostera marina | 2 | Zosma02g21400.v3.1, Zosma04g17980.v3.1 |