Basic Information
Locus ID:
SOLCI003057200
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold27711 | 51 | 1232 | + | SOLCI003057200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 44,687.28 Da | 57.77 | 71.07 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 156 | 199 | 5.74774E-18 | - |
| Pfam | PF13639 | Ring finger domain | 156 | 199 | 3.4E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 142 | 205 | 4.71E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 132 | 208 | 3.6E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 157 | 198 | 2.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 157 | 199 | 12.799091 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 374 | 393 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 330 | 350 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33565.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_004250122.1 | RING-H2 finger protein ATL52 [Solanum lycopersicum] | 0 |
| Q8LFY8 | RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6N2AHR0 | RING-type E3 ubiquitin transferase OS=Solanum chilense OX=4083 GN=EJD97_010937 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology