Basic Information
Locus ID:
SOLCI003008900
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold27267 | 532 | 843 | - | SOLCI003008900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.90 | 11,466.94 Da | 50.77 | 71.84 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G74055.1 | 0 | |
| RefSeq | XP_015069278.1 | uncharacterized protein LOC107013915 [Solanum pennellii] | 0 |
| TrEMBL | A0A6N2AFJ2 | Transmembrane protein OS=Solanum chilense OX=4083 GN=EJD97_010752 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19736 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah001369 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg30922 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25956 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004819 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54903, Sgl60158 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000024046 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0018690, CQ.Regalona.r1.5BG0019910 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G74055.1 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2371 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.800 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-28550, nbisL1-mrna-28560 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10173 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-22553 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19288 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132634260 |
| Solanaceae | Solanum chilense | 1 | SOLCI003008900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107013915 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G1344 |