Basic Information
Locus ID:
SOLCI003006900
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Hippocampus abundant
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold2726 | 37243 | 41977 | - | SOLCI003006900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 48,074.42 Da | 34.16 | 119.77 | 0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17330 | MFS_SLC46_TetA_like | 21 | 416 | 3.21979E-56 | - |
| Pfam | PF07690 | Major Facilitator Superfamily | 59 | 377 | 4.6E-19 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 59 | 418 | 8.5E-34 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 50 | 418 | 3.0E-32 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 1 | 423 | 8.931659 | IPR020846 |
| ProSitePatterns | PS00216 | Sugar transport proteins signature 1. | 73 | 89 | - | IPR005829 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42210.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_015058994.1 | hippocampus abundant transcript-like protein 1 [Solanum pennellii] | 0 |
| TrEMBL | A0A6N2BKM0 | MFS domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_010738 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology