Basic Information
Locus ID:
SOLCI003001800
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
zinc-RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold2722 | 34263 | 34928 | + | SOLCI003001800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 24,469.73 Da | 42.32 | 86.52 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 24 | 68 | 3.21764E-30 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 24 | 71 | 1.3E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 20 | 79 | 2.75E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 9 | 80 | 1.4E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 26 | 66 | 2.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 26 | 67 | 13.094151 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 41 | 50 | - | IPR017907 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015065149.1 | E3 ubiquitin ligase rnf-5-like isoform X2 [Solanum pennellii] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BGT6 | RING-type E3 ubiquitin transferase OS=Solanum chilense OX=4083 GN=EJD97_010710 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology