Basic Information
Locus ID:
SOLCI002997100
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold2719 | 61445 | 62269 | + | SOLCI002997100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 30,245.39 Da | 57.22 | 74.71 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 52 | 102 | 1.82797E-25 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 54 | 100 | 6.0E-9 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 49 | 113 | 1.6E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 42 | 114 | 1.1E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 54 | 100 | 1.2E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 54 | 101 | 12.799091 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 69 | 78 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27470.1 | RING membrane-anchor 3. Encodes a RING finger E3 ubiquitin ligase. | 0 |
| RefSeq | XP_015089584.1 | E3 ubiquitin-protein ligase RMA3-like [Solanum pennellii] | 0 |
| Q8GUK7 | E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BGU9 | RING-type E3 ubiquitin transferase OS=Solanum chilense OX=4083 GN=EJD97_010699 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology