halophFGD

Basic Information

Locus ID: SOLCI002982900

Species & Taxonomic ID: Solanum chilense & 4083

Genome Assembly: GCA_006013705.1

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold27073	338	1444	+	SOLCI002982900

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.16	42,149.07 Da	33.56	91.06	-0.06

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF81383	F-box domain	3	57	1.13E-9	IPR036047
SUPERFAMILY	SSF50965	Galactose oxidase, central domain	105	346	1.23E-7	IPR011043
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	112	296	5.1E-21	IPR017451

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT3G23880.1	F-box and associated interaction domains-containing protein.	0
RefSeq	XP_015064707.1	F-box/kelch-repeat protein At3g23880-like [Solanum pennellii]	0
Swiss-Prot	Q9LIR8	F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana OX=3702 GN=At3g23880 PE=2 SV=1	0
TrEMBL	A0A6N2AHV2	F-box domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_010634 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_7_RagTag.1487
Solanaceae	Lycium barbarum	5	gene-LOC132610589, gene-LOC132611646, gene-LOC132611647 ... gene-LOC132611649, gene-LOC132639673
Solanaceae	Solanum chilense	5	SOLCI002731400, SOLCI002982900, SOLCI003874500 ... SOLCI005104000, SOLCI006516800
Solanaceae	Solanum pennellii	4	gene-LOC107009918, gene-LOC107009922, gene-LOC107009962 ... gene-LOC114074088