Basic Information
Locus ID:
SOLCI002971200
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold2699 | 52421 | 56540 | - | SOLCI002971200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 53,118.81 Da | 47.90 | 70.98 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09991 | HDAC_classI | 27 | 334 | 0.0 | - |
| Pfam | PF00850 | Histone deacetylase domain | 41 | 332 | 2.8E-83 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 22 | 387 | 7.19E-123 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 20 | 395 | 5.8E-133 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 9 | 469 | 1.0E-203 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 269 | 279 | 2.6E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 152 | 175 | 2.6E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 184 | 199 | 2.6E-24 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 247 | 265 | 1.0E-59 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 130 | 150 | 1.0E-59 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 109 | 126 | 1.0E-59 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 43 | 60 | 1.0E-59 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 230 | 243 | 1.0E-59 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 171 | 187 | 1.0E-59 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 76 | 94 | 1.0E-59 | IPR003084 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 389 | 471 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 452 | 471 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 404 | 441 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63110.1 | histone deacetylase 6. RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing. | 0 |
| RefSeq | XP_015077045.1 | histone deacetylase 6 [Solanum pennellii] | 0 |
| Q9FML2 | Histone deacetylase 6 OS=Arabidopsis thaliana OX=3702 GN=HDA6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BJZ9 | Histone deacetylase OS=Solanum chilense OX=4083 GN=EJD97_010587 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology