Basic Information
Locus ID:
SOLCI002910600
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold2651 | 101743 | 107956 | - | SOLCI002910600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 57,834.95 Da | 47.60 | 90.97 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14830 | Delta_COP_N | 4 | 133 | 4.69296E-82 | - |
| CDD | cd09254 | AP_delta-COPI_MHD | 285 | 524 | 4.87586E-109 | - |
| Pfam | PF00928 | Adaptor complexes medium subunit family | 284 | 502 | 1.2E-29 | IPR028565 |
| SUPERFAMILY | SSF49447 | Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor | 285 | 525 | 6.28E-24 | IPR036168 |
| SUPERFAMILY | SSF64356 | SNARE-like | 5 | 141 | 2.43E-29 | IPR011012 |
| Gene3D | G3DSA:3.30.450.60 | - | 3 | 141 | 1.1E-13 | - |
| Gene3D | G3DSA:2.60.40.1170 | Mu homology domain, subdomain B | 390 | 526 | 8.2E-10 | - |
| Gene3D | G3DSA:2.60.40.1170 | Mu homology domain, subdomain B | 287 | 523 | 8.2E-10 | - |
| ProSiteProfiles | PS51072 | Mu homology domain (MHD) profile. | 284 | 527 | 32.387474 | IPR028565 |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05010.1 | clathrin adaptor complexes medium subunit family protein. | 0 |
| RefSeq | XP_004230447.1 | coatomer subunit delta [Solanum lycopersicum] | 0 |
| Q93Y22 | Coatomer subunit delta OS=Arabidopsis thaliana OX=3702 GN=At5g05010 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6N2BN52 | Coatomer subunit delta OS=Solanum chilense OX=4083 GN=EJD97_010349 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg26429, jg28366, jg30064 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_10486, gene_15817, gene_19740 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010639 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_7g165740, BVRB_8g197370, BVRB_9g219960 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40714, Sbi_jg50723 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2278 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00005227, GOSA_00006366 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl01794, Sgl06954, Sgl55978, Sgl61150 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000011885, gene:ENSEOMG00000018025 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.3BG0010730, CQ.Regalona.r1.7BG0010380 ... |
| Anacardiaceae | Pistacia vera | 5 | pistato.v30079110, pistato.v30079140, pistato.v30111950 ... |
| Apiaceae | Apium graveolens | 2 | Ag6G01291, Ag6G02750 |
| Arecaceae | Cocos nucifera | 2 | COCNU_09G006200, scaffold008549G000060 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103717273, gene-LOC103723959 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.3430.V1.1, AsparagusV1_08.2817.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G23899, Ftri12G04119, Ftri6G30769 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G05010.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013243m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g37790.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g055610.2N, BniB05g029420.2N, BniB08g002010.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq07G1578, Ceq08G1941 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl07G1694, Cgl08G2018 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno18g00180 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0225s00026.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g16530 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2185 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.392 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026743 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G06882, Lb2G11563 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.3778, AH09.2359, BH02.3790, BH07.4103, BH09.2563 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0038900, gene-QOZ80_1BG0088920 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0064240.1, HORVU.MOREX.r3.3HG0303600.1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_013437, gene-QYE76_013473, gene-QYE76_055562 ... |
| Poaceae | Oryza coarctata | 5 | Oco01G024160, Oco09G005500, Oco09G006330, Oco10G006490 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os01g61710.1, LOC_Os05g24601.1, LOC_Os08g28080.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_03G326700, gene-BS78_04G121900 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0505134, Pt_Chr0505382, Pt_Chr0602026 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr0G033450, Chr19G006290, Chr19G006380, Chr24G005370 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G408100, Tel3E01G564600 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG037070, gene_TRIDC1BG042050 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G246900.1, TraesCS1B02G257500.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb138410_P003, Zm00001eb411050_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-1098 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g6399 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG06.1483, evm.TU.LG11.833, evm.TU.LG18.1180 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g00240, gene.Posoc07g15660 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.1003 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13485 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10864 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9239 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000004l.269, evm.TU.utg000004l.270 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003991 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3672 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7699 |
| Salicaceae | Populus euphratica | 3 | populus_peu29103, populus_peu29104, populus_peu30490 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132598636 |
| Solanaceae | Solanum chilense | 2 | SOLCI002910600, SOLCI003632500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002414, gene-LOC107006198 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.10596_chr07_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0639 |
| Zosteraceae | Zostera marina | 2 | Zosma03g17550.v3.1, Zosma03g18220.v3.1 |