Basic Information
Locus ID:
SOLCI002906700
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
RQC
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold265 | 114748 | 126126 | + | SOLCI002906700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.93 | 131,797.16 Da | 44.91 | 74.99 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 640 | 772 | 6.47657E-70 | - |
| CDD | cd17920 | DEXHc_RecQ | 437 | 639 | 6.88947E-103 | - |
| Pfam | PF16124 | RecQ zinc-binding | 774 | 856 | 1.8E-15 | IPR032284 |
| Pfam | PF09382 | RQC domain | 863 | 976 | 1.7E-22 | IPR018982 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 451 | 619 | 1.9E-17 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 658 | 762 | 6.6E-18 | IPR001650 |
| Pfam | PF00570 | HRDC domain | 1023 | 1089 | 6.2E-13 | IPR002121 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 267 | 781 | 1.81E-42 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 638 | 906 | 2.86E-58 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 1017 | 1092 | 1.29E-12 | IPR010997 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 1011 | 1096 | 4.0E-19 | IPR044876 |
| Gene3D | G3DSA:1.10.10.10 | - | 863 | 973 | 9.0E-20 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 640 | 859 | 7.7E-67 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 413 | 639 | 6.3E-92 | IPR027417 |
| SMART | SM00490 | helicmild6 | 682 | 763 | 1.3E-27 | IPR001650 |
| SMART | SM00487 | ultradead3 | 445 | 648 | 1.8E-30 | IPR014001 |
| SMART | SM00956 | RQC_2 | 865 | 976 | 6.5E-30 | IPR018982 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 441 | 916 | 1.8E-169 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 654 | 811 | 19.536583 | IPR001650 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 672 | 714 | 10.166529 | IPR001763 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 457 | 632 | 21.342274 | IPR014001 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 1017 | 1099 | 17.173141 | IPR002121 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 571 | 580 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1098 | 1133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 993 | 1012 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1116 | 1133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 991 | 1012 | - | - |
| Coils | Coil | Coil | 297 | 317 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_004231337.1 | ATP-dependent DNA helicase Q-like 4A [Solanum lycopersicum] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2CAU3 | DNA helicase OS=Solanum chilense OX=4083 GN=EJD97_010319 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology