Basic Information
Locus ID:
SOLCI002863600
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
E3 ubiquitin-protein ligase LUL4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold261 | 160363 | 171674 | + | SOLCI002863600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 40,780.56 Da | 60.36 | 70.75 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 301 | 341 | 7.50027E-26 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 300 | 346 | 9.1E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 301 | 347 | 5.81E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 289 | 351 | 4.1E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 302 | 340 | 2.5E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 302 | 341 | 11.382803 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015062564.1 | probable E3 ubiquitin-protein ligase LUL4 [Solanum pennellii] | 0 |
| Q8LA32 | Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2C9E6 | RING-type E3 ubiquitin transferase OS=Solanum chilense OX=4083 GN=EJD97_010148 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology