Basic Information
Locus ID:
SOLCI002727600
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold2502 | 56145 | 73802 | - | SOLCI002727600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 132,031.48 Da | 36.86 | 81.30 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 190 | 510 | 1.0874E-135 | - |
| CDD | cd00121 | MATH | 46 | 169 | 1.13797E-33 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 639 | 891 | 3.1E-73 | IPR024729 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 901 | 1109 | 1.1E-52 | IPR029346 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 192 | 505 | 3.8E-45 | IPR001394 |
| Pfam | PF00917 | MATH domain | 53 | 171 | 8.3E-16 | IPR002083 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 188 | 529 | 2.16E-86 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 46 | 176 | 4.25E-38 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 699 | 816 | 5.4E-40 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 817 | 914 | 2.6E-22 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 42 | 188 | 1.5E-44 | IPR008974 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 189 | 509 | 2.2E-81 | - |
| SMART | SM00061 | math_3 | 46 | 150 | 1.7E-13 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 192 | 508 | 38.329399 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 44 | 169 | 34.275177 | IPR002083 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 427 | 444 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 193 | 208 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.1 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_015078657.1 | ubiquitin carboxyl-terminal hydrolase 13-like [Solanum pennellii] | 0 |
| Q84WU2 | Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BPH0 | ubiquitinyl hydrolase 1 OS=Solanum chilense OX=4083 GN=EJD97_009675 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology