Basic Information
Locus ID:
SOLCI002706700
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
poly(A) polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold2488 | 26366 | 31223 | - | SOLCI002706700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 69,023.03 Da | 55.38 | 82.10 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 58 | 213 | 6.2632E-28 | - |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 364 | 422 | 5.2E-12 | IPR007010 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 92 | 167 | 1.1E-7 | IPR002934 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 19 | 360 | 5.7E-94 | IPR007012 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 17 | 212 | 2.73E-50 | IPR043519 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 364 | 489 | 5.69E-36 | IPR011068 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 233 | 360 | 4.71E-48 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 51 | 207 | 2.7E-138 | IPR043519 |
| Gene3D | G3DSA:1.10.1410.10 | - | 19 | 359 | 2.7E-138 | - |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 364 | 479 | 3.5E-27 | - |
| PIRSF | PIRSF018425 | PolyA_polymerase | 6 | 600 | 9.8E-202 | IPR014492 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 541 | 589 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 495 | 604 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 501 | 539 | - | - |
| Coils | Coil | Coil | 40 | 60 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32850.7 | nuclear poly(a) polymerase. Encodes a nuclear poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_010314830.1 | nuclear poly(A) polymerase 4 isoform X2 [Solanum lycopersicum] | 0 |
| Q8VYW1 | Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=PAPS4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BM59 | Poly(A) polymerase OS=Solanum chilense OX=4083 GN=EJD97_009600 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology