Basic Information
Locus ID:
SOLCI002696000
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
PAN-like domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold248 | 70035 | 73396 | - | SOLCI002696000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 91,586.38 Da | 42.95 | 86.51 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 509 | 775 | 1.13344E-88 | - |
| CDD | cd01098 | PAN_AP_plant | 376 | 463 | 3.84842E-14 | - |
| CDD | cd00028 | B_lectin | 76 | 198 | 4.21822E-18 | IPR001480 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 504 | 772 | 6.0E-46 | IPR001245 |
| Pfam | PF08276 | PAN-like domain | 389 | 448 | 7.2E-13 | IPR003609 |
| Pfam | PF01453 | D-mannose binding lectin | 122 | 224 | 3.7E-23 | IPR001480 |
| Pfam | PF00954 | S-locus glycoprotein domain | 260 | 365 | 2.6E-16 | IPR000858 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 122 | 229 | 8.9E-14 | IPR036426 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 486 | 774 | 6.88E-78 | IPR011009 |
| Gene3D | G3DSA:2.90.10.10 | - | 65 | 196 | 9.8E-8 | IPR036426 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 471 | 578 | 2.4E-34 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 579 | 783 | 3.1E-56 | - |
| SMART | SM00108 | blect_4 | 75 | 198 | 1.3E-12 | IPR001480 |
| SMART | SM00220 | serkin_6 | 503 | 779 | 3.7E-32 | IPR000719 |
| SMART | SM00473 | ntp_6 | 389 | 462 | 0.0034 | IPR003609 |
| PIRSF | PIRSF000641 | SRK | 39 | 486 | 2.1E-80 | IPR024171 |
| PIRSF | PIRSF000641 | SRK | 471 | 815 | 1.2E-136 | IPR024171 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 503 | 790 | 37.332855 | IPR000719 |
| ProSiteProfiles | PS50948 | PAN/Apple domain profile. | 380 | 463 | 8.398058 | IPR003609 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 69 | 192 | 12.40231 | IPR001480 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 509 | 532 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 624 | 636 | - | IPR008271 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27290.1 | S-locus lectin protein kinase family protein. | 0 |
| RefSeq | XP_027770013.1 | uncharacterized protein LOC107010094 [Solanum pennellii] | 0 |
| O81832 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 OS=Arabidopsis thaliana OX=3702 GN=At4g27290 PE=3 SV=4 | 0 | |
| TrEMBL | A0A6N2CHS2 | Receptor-like serine/threonine-protein kinase OS=Solanum chilense OX=4083 GN=EJD97_009541 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asteraceae | Flaveria trinervia | 1 | Ftri5G28475 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621388 |
| Solanaceae | Solanum chilense | 1 | SOLCI002696000 |
| Solanaceae | Solanum pennellii | 5 | gene-LOC107010092, gene-LOC107010094, gene-LOC107016926 ... |