Basic Information
Locus ID:
SOLCI002671600
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
EIN3-binding F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold2460 | 16538 | 19312 | + | SOLCI002671600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.03 | 67,652.90 Da | 39.56 | 108.93 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 474 | 496 | 0.11 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 211 | 234 | 3.4E-4 | IPR001611 |
| Pfam | PF00646 | F-box domain | 59 | 99 | 1.6E-4 | IPR001810 |
| Pfam | PF13516 | Leucine Rich repeat | 263 | 285 | 0.33 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 236 | 259 | 0.015 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 553 | 575 | 1.2 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 171 | 416 | 9.42E-40 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 293 | 635 | 1.41E-34 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 53 | 97 | 1.57E-8 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 131 | 249 | 6.9E-25 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 441 | 637 | 1.2E-35 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 250 | 440 | 2.5E-38 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 185 | 210 | 0.33 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 500 | 525 | 3.5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 263 | 288 | 3.1E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 527 | 552 | 0.1 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 237 | 262 | 2.0E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 211 | 236 | 2.5E-6 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 579 | 604 | 54.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 63 | 104 | 3.1E-4 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 448 | 473 | 1.2 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 474 | 499 | 6.6 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 369 | 394 | 0.57 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 553 | 577 | 3.9 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 395 | 420 | 27.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 343 | 368 | 26.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 421 | 446 | 9.7 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25350.1 | EIN3-binding F box protein 2. Arabidopsis thaliana EIN3-binding F-box protein 2 (EBF2) mRNA. Part of the SCF complex, it is located in the nucleus and is involved in the ethylene-response pathway. | 0 |
| RefSeq | XP_015061136.1 | EIN3-binding F-box protein 1-like [Solanum pennellii] | 0 |
| Q708Y0 | EIN3-binding F-box protein 2 OS=Arabidopsis thaliana OX=3702 GN=EBF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BPZ2 | F-box domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_009447 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology