Basic Information
Locus ID:
SOLCI002549500
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Mitogen-activated protein kinase kinase kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold2372 | 107749 | 108711 | + | SOLCI002549500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.23 | 36,187.07 Da | 30.88 | 85.00 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 4 | 276 | 5.1E-50 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 3 | 305 | 8.47E-66 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 2 | 298 | 1.4E-59 | - |
| SMART | SM00220 | serkin_6 | 3 | 276 | 3.4E-62 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 3 | 276 | 38.44944 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 128 | 140 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G50310.1 | mitogen-activated protein kinase kinase kinase 20. member of MEKK subfamily | 0 |
| RefSeq | XP_004245431.1 | mitogen-activated protein kinase kinase kinase 18-like [Solanum lycopersicum] | 0 |
| Q9SND6 | Mitogen-activated protein kinase kinase kinase 20 OS=Arabidopsis thaliana OX=3702 GN=MAPKKK20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BTG6 | Protein kinase domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_008994 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 3 | gene-LOC132637195, gene-LOC132637196, gene-LOC132638225 |
| Solanaceae | Solanum chilense | 4 | SOLCI002050200, SOLCI002549500, SOLCI003126700 ... |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107027802, gene-LOC107027843, gene-LOC114077897 ... |