Basic Information
Locus ID:
SOLCI002523700
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold235 | 225921 | 228240 | + | SOLCI002523700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.36 | 51,640.93 Da | 41.52 | 114.74 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 3 | 41 | 3.0E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 2 | 47 | 7.06E-8 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 110 | 374 | 2.35E-8 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 74 | 440 | 2.0E-5 | IPR032675 |
| SMART | SM00256 | fbox_2 | 7 | 48 | 0.0012 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G49610.1 | F-box family protein. | 0 |
| RefSeq | XP_027774349.1 | uncharacterized protein LOC107025267 [Solanum pennellii] | 0 |
| Q9FX89 | Putative F-box protein At1g49610 OS=Arabidopsis thaliana OX=3702 GN=At1g49610 PE=4 SV=2 | 0 | |
| TrEMBL | A0A6N2CC84 | F-box domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_008927 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 6 | gene-LOC132612692, gene-LOC132617794, gene-LOC132619153 ... |
| Solanaceae | Solanum chilense | 2 | SOLCI002523600, SOLCI002523700 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107025266, gene-LOC107025267, gene-LOC107025498 |