Basic Information
Locus ID:
SOLCI002523600
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold235 | 222018 | 224055 | + | SOLCI002523600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.31 | 53,898.02 Da | 38.41 | 102.43 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 38 | 73 | 3.9E-5 | IPR001810 |
| SUPERFAMILY | SSF52058 | L domain-like | 160 | 430 | 4.42E-11 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 35 | 110 | 4.32E-10 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 142 | 440 | 1.3E-10 | IPR032675 |
| SMART | SM00256 | fbox_2 | 42 | 82 | 4.6E-4 | IPR001810 |
| Coils | Coil | Coil | 397 | 417 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22700.1 | F-box/RNI-like/FBD-like domains-containing protein. | 0 |
| RefSeq | XP_027774349.1 | uncharacterized protein LOC107025267 [Solanum pennellii] | 0 |
| Q9FNJ1 | F-box/FBD/LRR-repeat protein At5g22700 OS=Arabidopsis thaliana OX=3702 GN=At5g22700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6N2CDX8 | F-box domain-containing protein (Fragment) OS=Solanum chilense OX=4083 GN=EJD97_008926 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 6 | gene-LOC132612692, gene-LOC132617794, gene-LOC132619153 ... |
| Solanaceae | Solanum chilense | 2 | SOLCI002523600, SOLCI002523700 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107025266, gene-LOC107025267, gene-LOC107025498 |