Basic Information
Locus ID:
SOLCI002474200
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold2312 | 24194 | 30908 | + | SOLCI002474200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.73 | 120,425.78 Da | 35.06 | 75.26 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 885 | 919 | 9.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 426 | 460 | 8.8E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 320 | 636 | 1.39E-38 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 806 | 1064 | 2.24E-33 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 777 | 1022 | 9.1E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 282 | 483 | 1.6E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 484 | 662 | 9.8E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 419 | 460 | 1.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 509 | 550 | 21.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 793 | 834 | 330.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 313 | 352 | 3.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 971 | 1012 | 110.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 837 | 877 | 5.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 463 | 504 | 0.014 | IPR001680 |
| SMART | SM00320 | WD40_4 | 880 | 919 | 3.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 373 | 413 | 5.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 553 | 593 | 210.0 | IPR001680 |
| SMART | SM00668 | ctlh | 1 | 55 | 2.5E-9 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 887 | 919 | 10.23196 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 887 | 928 | 12.647216 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 426 | 469 | 11.009724 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 1 | 55 | 12.396088 | IPR006595 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 447 | 461 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1075 | 1097 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1080 | 1097 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_015082559.1 | topless-related protein 4-like isoform X2 [Solanum pennellii] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6N2BLF5 | CTLH domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_008746 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology