Basic Information
Locus ID:
SOLCI002452100
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Short Name:
SERK1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold2299 | 25614 | 31942 | + | SOLCI002452100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 69,340.90 Da | 41.69 | 100.09 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 307 | 578 | 6.1E-45 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 30 | 70 | 2.4E-9 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 98 | 120 | 0.76 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 35 | 194 | 2.04E-38 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 285 | 581 | 2.6E-79 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 383 | 600 | 3.6E-71 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 275 | 382 | 9.0E-40 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 29 | 216 | 3.5E-61 | IPR032675 |
| SMART | SM00220 | serkin_6 | 306 | 580 | 2.0E-35 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 306 | 593 | 36.922966 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 312 | 334 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 429 | 441 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71830.1 | somatic embryogenesis receptor-like kinase 1. Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. later | 0 |
| RefSeq | XP_015073305.1 | somatic embryogenesis receptor kinase 1 [Solanum pennellii] | 0 |
| Q94AG2 | Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana OX=3702 GN=SERK1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6N2BRF4 | Protein kinase domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_008677 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology