Basic Information
Locus ID:
SOLCI002409200
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold22672 | 1 | 600 | - | SOLCI002409200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 21,385.67 Da | 56.43 | 54.70 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 25 | 69 | 3.78525E-29 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 25 | 72 | 3.5E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 23 | 80 | 3.12E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 10 | 81 | 1.1E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 27 | 67 | 4.3E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 27 | 68 | 13.241681 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 42 | 51 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 113 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23780.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_004233408.1 | E3 ubiquitin-protein ligase RNF185 [Solanum lycopersicum] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2AJL8 | RING-type E3 ubiquitin transferase (Fragment) OS=Solanum chilense OX=4083 GN=EJD97_008528 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology