Basic Information
Locus ID:
SOLCI002373400
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Homocysteine S-methyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold2242 | 51808 | 60727 | - | SOLCI002373400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 37,241.61 Da | 38.75 | 90.41 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02574 | Homocysteine S-methyltransferase | 28 | 335 | 5.7E-77 | IPR003726 |
| SUPERFAMILY | SSF82282 | Homocysteine S-methyltransferase | 24 | 340 | 2.35E-84 | IPR036589 |
| Gene3D | G3DSA:3.20.20.330 | - | 16 | 335 | 1.3E-102 | IPR036589 |
| PIRSF | PIRSF037505 | BHMT | 294 | 343 | 0.24 | IPR017226 |
| PIRSF | PIRSF037505 | BHMT | 138 | 215 | 670.0 | IPR017226 |
| PIRSF | PIRSF037505 | BHMT | 13 | 125 | 7.2E-7 | IPR017226 |
| ProSiteProfiles | PS50970 | Homocysteine-binding domain profile. | 15 | 337 | 47.932041 | IPR003726 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G63250.1 | homocysteine methyltransferase 2. Encodes a homocysteine methyltransferase (HMT). Among the three HMT coding genes in the genome, HMT2 is responsible for a significant proportion of HMT activity in the flower stalks and silique hulls. However, HMT2 does not significantly contribute to the total HMT activity in seeds. | 0 |
| RefSeq | XP_004247188.1 | homocysteine S-methyltransferase 2 isoform X1 [Solanum lycopersicum] | 0 |
| P56707 | Selenocysteine methyltransferase OS=Astragalus bisulcatus OX=20406 GN=SMTA PE=1 SV=1 | 0 | |
| TrEMBL | A0A3Q7I5I0 | Hcy-binding domain-containing protein OS=Solanum lycopersicum OX=4081 GN=101262954 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology