Basic Information
Locus ID:
SOLCI002333900
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold22133 | 3153 | 3656 | + | SOLCI002333900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.32 | 19,395.59 Da | 34.47 | 93.35 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 78 | 124 | 1.9E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 70 | 129 | 1.43E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 46 | 131 | 1.4E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 79 | 123 | 2.8E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 79 | 124 | 13.212175 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G20395.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_049390458.1 | uncharacterized protein LOC125854901 [Solanum stenotomum] | 0 |
| Q940Q4 | RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6N2AHF5 | RING-type domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_008278 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg11433, jg22607, jg6095 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00024334, Pov_00024335 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132628965, gene-LOC132628972, gene-LOC132628983 |
| Solanaceae | Solanum chilense | 2 | SOLCI000858300, SOLCI002333900 |