Basic Information
Locus ID:
SOLCI002323600
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold2209 | 128383 | 130138 | - | SOLCI002323600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.57 | 30,734.33 Da | 43.63 | 70.93 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 39 | 270 | 1.5E-83 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 156 | 260 | 2.7E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 154 | 273 | 1.1E-44 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 159 | 261 | 27.274811 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 127 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29080.1 | phytochrome-associated protein 2. phytochrome-associated protein 2 (PAP2) | 0 |
| RefSeq | XP_015067589.1 | auxin-responsive protein IAA27-like [Solanum pennellii] | 0 |
| Q9ZSY8 | Auxin-responsive protein IAA27 OS=Arabidopsis thaliana OX=3702 GN=IAA27 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BMH0 | Auxin-responsive protein OS=Solanum chilense OX=4083 GN=EJD97_008233 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology