Basic Information
Locus ID:
SOLCI002313400
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Short Name:
UBP16
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold2202 | 6286 | 14510 | - | SOLCI002313400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.89 | 128,316.09 Da | 59.58 | 63.63 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 114 | 151 | 7.4E-9 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 634 | 936 | 1.9E-45 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 631 | 942 | 3.53E-84 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 111 | 156 | 3.14E-11 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 626 | 948 | 4.9E-91 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 103 | 155 | 4.1E-12 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 634 | 939 | 50.30302 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 114 | 151 | 11.706373 | IPR002893 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 114 | 151 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 635 | 650 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 173 | 198 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 358 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1138 | 1158 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 947 | 979 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 531 | 545 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 439 | 545 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 497 | 512 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1118 | 1172 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 173 | 189 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 297 | 353 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 293 | - | - |
| Coils | Coil | Coil | 41 | 61 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_004237986.1 | ubiquitin carboxyl-terminal hydrolase 17 [Solanum lycopersicum] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BPY7 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Solanum chilense OX=4083 GN=EJD97_008172 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology