Basic Information
Locus ID:
SOLCI002309000
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold2200 | 140618 | 141847 | - | SOLCI002309000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 43,340.90 Da | 44.56 | 89.07 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 199 | 327 | 6.6E-15 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 37 | 106 | 2.0E-5 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 183 | 328 | 1.7E-18 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 31 | 137 | 1.96E-15 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 171 | 328 | 8.7E-11 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 24 | 170 | 1.3E-8 | IPR036378 |
| SMART | SM00554 | fasc_3 | 224 | 328 | 2.7E-16 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 186 | 325 | 12.792395 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 25 | 173 | 9.005067 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 382 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55730.1 | FASCICLIN-like arabinogalactan 1. fasciclin-like arabinogalactan-protein 1 (Fla1) | 0 |
| RefSeq | XP_004244059.1 | fasciclin-like arabinogalactan protein 1 [Solanum lycopersicum] | 0 |
| Q9FM65 | Fasciclin-like arabinogalactan protein 1 OS=Arabidopsis thaliana OX=3702 GN=FLA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BLL4 | Fasciclin-like arabinogalactan protein 1 OS=Solanum chilense OX=4083 GN=EJD97_008144 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology